About the Site
This site provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.). SNP genotyping data (called against Nipponbare reference Os-Nipponbare-Reference-IRGSP-1.0 ) came from 3,000 Rice Genomes Project. Phenotype and passport data for the 3,000 rice varieties came from the International Rice Genebank Collection Information System ( IRGCIS ). We are a part of an ongoing effort by the International Rice Informatics Consortium ( IRIC ) to centralize information access to rice research data and provide computational tools to facilitate rice improvement via discovery of new gene-trait associations and accelerated breeding.
Publication
Mansueto, et
al. Rice
SNP-seek
database
update: new
SNPs,
indels, and
queries.Nucl.
Acids
Res.(2017)
45 (D1):
D1075-D1081.
doi:
10.1093/nar/gkw1135
This paper
describes
new features
and datasets
added to
SNP-Seek in
2015-2017 as
well as
software and
database
updates.
Version 3 Tiered Data Access
| User Tier | Available Data |
|---|---|
| Anonymous |
|
| Registered non-IRRI |
|
| Registered IRRI and paid-for subscribers |
|
