This site provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.). SNP genotyping data (called against
Nipponbare reference Os-Nipponbare-Reference-IRGSP-1.0) came from 3,000 Rice Genomes Project .
Phenotype and passport data for the 3,000 rice varieties came from the International Rice Genebank Collection Information System (IRGCIS).
We are a part of an ongoing effort by the International Rice Informatics Consortium (IRIC) to centralize information access to rice research data and provide computational tools to facilitate rice improvement via discovery of new gene-trait associations and accelerated breeding.
Genotypes
Query for SNPs from the 3000 genome project
Varieties
Query for Variety passport and phenotypes
JBrowse
Rice Genome Browser
GWAS
GWAS Results and tools
Help
Help and documentation
How to cite:
- Mansueto, et al. Rice SNP-seek database update: new SNPs,
indels, and queries.Nucl. Acids Res.(2017) 45 (D1):
D1075-D1081. doi: 10.1093/nar/gkw1135
This paper describes new features and datasets added to SNP-Seek in
2015-2017 as well as software and database updates.